Package ‘ qtl ’ December 3 , 2015
نویسندگان
چکیده
A starting point . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 add.cim.covar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 add.threshold . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11 addcovarint . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 addint . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 addloctocross . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16 addmarker . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 addpair . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 addqtl . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20 addtoqtl . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22 allchrsplits . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 argmax.geno . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 arithscan . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26 arithscanperm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27 badorder . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28 bayesint . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29
منابع مشابه
QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations
Article history: Received 20 December 2014 Received in revised form 20 January 2015 Accepted 16 February 2015 Available online 23 February 2015 QTL IciMapping is freely available public software capable of building high-density linkage maps and mapping quantitative trait loci (QTL) in biparental populations. Eight functionalities are integrated in this software package: (1) BIN: binning of redu...
متن کاملR/qtlcharts: Interactive Graphics for Quantitative Trait Locus Mapping
Every data visualization can be improved with some level of interactivity. Interactive graphics hold particular promise for the exploration of high-dimensional data. R/qtlcharts is an R package to create interactive graphics for experiments to map quantitative trait loci (QTL) (genetic loci that influence quantitative traits). R/qtlcharts serves as a companion to the R/qtl package, providing in...
متن کاملQuantitative trait locus analysis of leaf morphological characters, yield-related traits, and secondary metabolite contents in Eucommia ulmoides.
Eucommia ulmoides is cultivated for the production of eucommia rubber and Chinese herbal drugs. Molecular breeding methods, such as marker-assisted selection (MAS), have the potential to improve the efficiency of E. ulmoides breeding. Quantitative trait locus (QTL) analysis was applied to identify marker-trait associations for E. ulmoides using an F1 mapping population of 152 individuals derive...
متن کاملvqtl: An R package for Mean-Variance QTL Mapping
Most existing methods for QTL mapping in experimental crosses assume that the residual variance is constant across all individuals. But common situations violate this assumption. For many phenotypes, one sex is more variable than the other, some experimenters make more precise measurements than others, and specific genetic factors influence environmental sensitivity. In these cases, mean-varian...
متن کاملPackage ‘ qtl ’ March 5 , 2015
A starting point . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 add.cim.covar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10 add.threshold . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11 addcovarint . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 addint . ...
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